miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159746924|gb|EG375486.1|EG375486 TATTTGCAAACAACCACAACGATAAAAGTAGCACCGACAAGAGCGGAAATATTCTGCCTGGTATATGCACCGTTGTTGAT
TCGAAGATATGCCACCCCACACAGTTTGACTTCTACCTCTGCAGTCATGCTGGAATTCAGGGCACTAGTAAGCCAGCACA
TTATCATGTTCTGTGGGACGAGAACAATTTCACGGCGGACGAAATGCAGACTTTGACAAACAACCTTTGCTACACGTATG
CACGTTGCACACGATCTGTTTCTGTCGTGCCGCCTGTTTACTATGCTCATCTAGCCGCATTCCGGGCACGTTTCTACATG
GACCGAGATATGCCAGAAAGCCTCTCGGTGAAGAAAGCCAACGGGGCAAATCGAAGCGCCATGAAGACTATGCCGGCGGT
GAAAGAGAGGGTGAAGAGGGTGATGTTCTACTGCTGACAAGGGGACAACACTGGCACCCAGACATGCTATATAGCTAACA
CTAGGAATTAGAGGTTTAGATTAGATATGTAGGATGGGAAGAGTGAAGAACTTGGACGATGTTCTGTTAAGGGCGCAGCA
TCCTCCGTAATATATATAATACTCCCTCTGTCTATAGTGTCAAAAAACGTCTTACATTTTGAGACAGAGGGAGTAGCTTA
TAGATTGGCAAAATGTCAGTCCGGAAAATGTGCACAAATATGGTTCTTAAGGGCAGTCCTTGTCTGAACTTGGCAGGAAT
TTGTGCCATATTTTGGGCATGTATNNNNCACATGAATTTGGGGCATATATTAATGCAAGAATTAGGCAAAAAA




Most similar to sp|Q69VD5|PNH1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp.
            japonica GN=PHN1 PE=2 SV=1
          Length = 979

 Score =  249 bits (636), Expect = 2e-65
 Identities = 117/145 (80%), Positives = 132/145 (91%), Gaps = 1/145 (0%)
 Frame = +3

Query: 3    FANNHNDKSSTDKSGNILPGICTVVDSKICHPTQFDFYLCSHAGIQGTSKPAHYHVLWDE 182
            FANNH D+SSTDKSGNILPG  TVVDSKICHP++FDFYLCSHAGIQGTS+PAHYHVLWDE
Sbjct: 837  FANNHKDRSSTDKSGNILPG--TVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDE 894

Query: 183  NNFTADEMQTLTNNLCYTYARCTRSVSVVPPVYYAHLAAFRARFYMDRDMPESLSVKKAN 362
            NNFTADEMQTLTNNLCYTYARCTRSVSVVPP YYAHLAAFRARFYM+ +M E+ +  K++
Sbjct: 895  NNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSS 954

Query: 363  -GANRSAMKTMPAVKERVKRVMFYC 434
             G N +++K +PAVKE+VKRVMFYC
Sbjct: 955  TGTNGTSVKPLPAVKEKVKRVMFYC 979